Tracks on University of California Santa

            After watching the video 2; creating the customer tracks which is display the annotation sets in the UCSC of GB. By the standard annotation tracks the custom tracks is displayed during the gathering of the GB. It is very useful to visualizing the data in a conjunction by the existence of the annotation of data. If the data is kept in the server of UCSC for the finite period of the custom tracks that is removed from the server after the 48 hours.

In the custom tracks the formation of the data is include the following steps;

Through the formatting of data create the annotation file

Gene transfer format

General feature format

Wiggle format

Table Browser of University of California Santa 

            After watching the video 4 that is related to the UCSC Genome Browser for the table browser where the data is underlying the every annotation track in the GB which is kept for the database tables. By the table browser tools the bioinformatics of the UCSC GB websites offer the complete access for the tables. The graphical interface is provided by Table browser, to permits a user for the query of the database tables by the advanced and basic structured query. To manipulating as well as downloading the entire massive database the table browser provide the easy alternatives. By pressing the table link navigate the table browse link in a top blue navigation bar as shown in the below figure

Results of University of California Sant

        After the watching the video 1 that is related to the basic of the genome browser is selected the UCSC. This related to the Human genome browser of the hg19 assembly as shown in below figure. As we learn from video along with as shown in the below figure at a top of page the websites has the navigation bar bellows it has the two rows and column for the navigating along with the display of the annotated  genome. The assemblies of the human genome is displayed on the next red mark that presents precisely about the portion of the chromosome. At last in the bottom of the page as in figure 1, the track control is grouped together through types, by using these control remove or add the individual annotation tracks form a display.

Figure 2: UCSC Genome browser to display the hg 18 assembly

            Now the result section about the video 2 is explain the result of the BLAT program about the forward primer and the reverse primer that is display on the BLAT search result on web page. If the view is selected as the hyperlinks then you will see the links for every results. By the BLAT results the link of browser take the GB that is aligned with the other tracks in an image.in the below results of the forward primer along with the reverse primer is shown the base by base for alignment of sequence in underlying of the GB.  

Figure 3: Result of Forward & reverse primer

The discussion of the video 4 is about the table browser as shown in the below figure, through setting of a genome that will ensure the Table browse tool which contains the entire set of gene data.

Figure 4: results for the table Browser